Index

A

a (deepSTRF.models.activations.ParametricDoubleExponential property) (deepSTRF.models.activations.ParametricSigmoid property) a_to_tau() (in module deepSTRF.models.prefiltering) AdapTrans (class in deepSTRF.models.prefiltering) add_noise_to_videos() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) AliceEEGDataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.alice_eeg)

attach_ahmed2025_well_tuned() (deepSTRF.datasets.audio.Downer2025Dataset method) audio_fs (deepSTRF.datasets.audio.audio_dataset.AudioNeuralDataset attribute) (deepSTRF.datasets.audio.AudioNeuralDataset attribute) AudioEncodingModel (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_model) AudioNeuralDataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.audio_dataset) auto_config() (in module deepSTRF.training) (in module deepSTRF.training.config)

B

b (deepSTRF.models.activations.ParametricDoubleExponential property) (deepSTRF.models.activations.ParametricSigmoid property) (deepSTRF.models.activations.ParametricSoftplus property) beta (deepSTRF.models.activations.ParametricSoftplus property) build_causal_window_mask() (in module deepSTRF.models.layers)

build_kernel() (deepSTRF.models.layers.LearnableExponentialDecay method) (deepSTRF.models.layers.ParametricSTRF method) (deepSTRF.models.layers.SeparableSTRF method) build_kernels() (deepSTRF.models.prefiltering.AdapTrans method) (deepSTRF.models.prefiltering.ICAdaptation method)

C

CausalLayerNorm (class in deepSTRF.models.layers) CausalSTRFConv (class in deepSTRF.models.layers) change_spatial_resolution() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) change_temporal_resolution() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) change_video_temporal_resolution() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) close() (deepSTRF.training.tb_log.TensorBoardSeedLogger method) (deepSTRF.training.wandb_log.WandbSeedLogger method) coherence() (in module deepSTRF.metrics) (in module deepSTRF.metrics.performance) compare_wav2spec_to_groundtruth() (in module deepSTRF.utils) (in module deepSTRF.utils.plotting) compute_CCmax() (in module deepSTRF.metrics.performance) compute_loss() (deepSTRF.training.Fitter method) (deepSTRF.training.fitter.Fitter method) compute_neuron_quality() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method)

compute_paper_tuning() (deepSTRF.datasets.audio.Downer2025Dataset method) compute_TTRC() (in module deepSTRF.metrics.performance) concat_neural_datasets() (in module deepSTRF.utils) (in module deepSTRF.utils.data) concatenate_datasets() (in module deepSTRF.utils.data) ConvNet2D (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_zoo) corrcoef() (in module deepSTRF.metrics) (in module deepSTRF.metrics.performance) count_trainable_params() (deepSTRF.models.neural_model.NeuralModel method) (deepSTRF.models.NeuralModel method) crcns_download() (in module deepSTRF.utils.data_download) CRCNSAA1Dataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.crcns_aa1) CRCNSAA2Dataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.crcns_aa2) CRCNSAA4Dataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.crcns_aa4) CRCNSAC1Dataset (class in deepSTRF.datasets.audio)

D

deepSTRF module deepSTRF.datasets module deepSTRF.datasets.audio module deepSTRF.datasets.audio.alice_eeg module deepSTRF.datasets.audio.audio_dataset module deepSTRF.datasets.audio.crcns_aa1 module deepSTRF.datasets.audio.crcns_aa2 module deepSTRF.datasets.audio.crcns_aa4 module deepSTRF.datasets.audio.espejo module deepSTRF.datasets.audio.le_2025 module deepSTRF.datasets.audio.nat4 module deepSTRF.datasets.audio.ns1 module deepSTRF.datasets.neural_dataset module deepSTRF.datasets.video module deepSTRF.datasets.video.video_dataset module deepSTRF.metrics module deepSTRF.metrics.losses module deepSTRF.metrics.performance module deepSTRF.models module deepSTRF.models.activations module deepSTRF.models.audio module deepSTRF.models.audio.audio_model module deepSTRF.models.audio.audio_zoo module deepSTRF.models.layers module deepSTRF.models.neural_model module deepSTRF.models.prefiltering module

deepSTRF.models.readouts module deepSTRF.models.scales module deepSTRF.models.video module deepSTRF.models.video.video_model module deepSTRF.training module deepSTRF.training.config module deepSTRF.training.fitter module deepSTRF.training.multi_seed module deepSTRF.training.seed module deepSTRF.training.tb_log module deepSTRF.training.wandb_log module deepSTRF.utils module deepSTRF.utils.data module deepSTRF.utils.data_download module deepSTRF.utils.hub module deepSTRF.utils.plotting module default_cache_dir() (in module deepSTRF.utils.data_download) detach() (deepSTRF.models.neural_model.NeuralModel method) (deepSTRF.models.NeuralModel method) DNet (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_zoo) Downer2025Dataset (class in deepSTRF.datasets.audio) download_aa1() (in module deepSTRF.datasets.audio.crcns_aa1) download_aa2() (in module deepSTRF.datasets.audio.crcns_aa2) download_aa4() (in module deepSTRF.datasets.audio.crcns_aa4) download_ac1() (in module deepSTRF.datasets.audio) download_alice_eeg() (in module deepSTRF.datasets.audio) (in module deepSTRF.datasets.audio.alice_eeg) download_downer2025() (in module deepSTRF.datasets.audio) download_espejo() (in module deepSTRF.datasets.audio) (in module deepSTRF.datasets.audio.espejo) download_espejo_nat_waveforms() (in module deepSTRF.datasets.audio) (in module deepSTRF.datasets.audio.espejo) download_nat4() (in module deepSTRF.datasets.audio.nat4) download_ns1() (in module deepSTRF.datasets.audio.ns1) download_pretrained() (in module deepSTRF.utils.hub) download_wingert2026() (in module deepSTRF.datasets.audio)

E

ERB_bandwidth() (in module deepSTRF.models.scales) ERB_to_Hz() (in module deepSTRF.models.scales) EspejoDataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.espejo)

evaluate() (deepSTRF.training.Fitter method) (deepSTRF.training.fitter.Fitter method) extra_repr() (deepSTRF.models.activations.ParametricDoubleExponential method) (deepSTRF.models.activations.ParametricSigmoid method) (deepSTRF.models.activations.ParametricSoftplus method)

F

F (deepSTRF.datasets.audio.audio_dataset.AudioNeuralDataset attribute) (deepSTRF.datasets.audio.AudioNeuralDataset attribute) figshare_download() (in module deepSTRF.utils.data_download) fill_missing_data() (in module deepSTRF.utils.data) finalize() (deepSTRF.training.tb_log.TensorBoardSeedLogger method) (deepSTRF.training.wandb_log.WandbSeedLogger method) fit() (deepSTRF.training.Fitter method) (deepSTRF.training.fitter.Fitter method) fit_multi_seed() (in module deepSTRF.training) (in module deepSTRF.training.multi_seed) Fitter (class in deepSTRF.training) (class in deepSTRF.training.fitter) forward() (deepSTRF.models.activations.ParametricDoubleExponential method) (deepSTRF.models.activations.ParametricSigmoid method) (deepSTRF.models.activations.ParametricSoftplus method) (deepSTRF.models.audio.audio_zoo.StateNet method) (deepSTRF.models.audio.audio_zoo.Transformer method) (deepSTRF.models.audio.ICNet method) (deepSTRF.models.audio.StateNet method) (deepSTRF.models.audio.Transformer method) (deepSTRF.models.layers.CausalLayerNorm method) (deepSTRF.models.layers.CausalSTRFConv method) (deepSTRF.models.layers.LearnableExponentialDecay method) (deepSTRF.models.layers.LocallyConnected1d method) (deepSTRF.models.layers.ParametricSTRF method) (deepSTRF.models.layers.SeparableSTRF method) (deepSTRF.models.layers.SinusoidalPositionalEncoding method) (deepSTRF.models.neural_model.NeuralModel method) (deepSTRF.models.NeuralModel method) (deepSTRF.models.prefiltering.AdapTrans method) (deepSTRF.models.prefiltering.ICAdaptation method) (deepSTRF.models.readouts.LinearReadout method) (deepSTRF.models.readouts.STRFReadout method) (deepSTRF.utils.data.ResponseSmoothingTransform method) (deepSTRF.utils.ResponseSmoothingTransform method)

freq_to_tau() (in module deepSTRF.models.prefiltering) from_pretrained() (deepSTRF.models.neural_model.NeuralModel class method) (deepSTRF.models.NeuralModel class method) from_rgb_to_grayscale() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) fve() (in module deepSTRF.metrics) (in module deepSTRF.metrics.performance)

G

get_a() (deepSTRF.models.prefiltering.AdapTrans method) get_animals_ids() (in module deepSTRF.datasets.audio.crcns_aa1) (in module deepSTRF.datasets.audio.crcns_aa2) get_area_cells() (in module deepSTRF.datasets.audio.crcns_aa1) (in module deepSTRF.datasets.audio.crcns_aa2) get_CFs() (in module deepSTRF.models.prefiltering) get_dt() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) get_F() (deepSTRF.datasets.audio.audio_dataset.AudioNeuralDataset method) (deepSTRF.datasets.audio.AudioNeuralDataset method) get_N() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method)

get_nrn_meta() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) get_responses_signal_power() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) get_S() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) get_stim_ids() (in module deepSTRF.datasets.audio.crcns_aa1) get_stim_ids_from_folders() (in module deepSTRF.datasets.audio.crcns_aa2) get_stims_ids_from_csv() (in module deepSTRF.datasets.audio.crcns_aa2) get_w() (deepSTRF.models.prefiltering.AdapTrans method) github_raw_download() (in module deepSTRF.utils.data_download) Greenwood() (in module deepSTRF.models.scales)

H

hanning_smooth() (in module deepSTRF.utils) (in module deepSTRF.utils.data) hearing_range_hz (deepSTRF.datasets.audio.audio_dataset.AudioNeuralDataset attribute) (deepSTRF.datasets.audio.AudioNeuralDataset attribute)

hop (deepSTRF.datasets.audio.audio_dataset.AudioNeuralDataset property) (deepSTRF.datasets.audio.AudioNeuralDataset property) Hz_to_ERB() (in module deepSTRF.models.scales) Hz_to_mel() (in module deepSTRF.models.scales)

I

ICAdaptation (class in deepSTRF.models.prefiltering)

ICNet (class in deepSTRF.models.audio) inverse_Greenwood() (in module deepSTRF.models.scales)

L

Le2025Dataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.le_2025) LearnableExponentialDecay (class in deepSTRF.models.layers) Linear (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_zoo)

LinearNonlinear (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_zoo) LinearReadout (class in deepSTRF.models.readouts) load_pretrained_from_dir() (in module deepSTRF.utils.hub) load_stim_data_csv() (in module deepSTRF.datasets.audio.crcns_aa2) LocallyConnected1d (class in deepSTRF.models.layers)

M

make_prefiltering() (in module deepSTRF.models.prefiltering) make_tensorboard_logger_factory() (in module deepSTRF.training.tb_log) make_wandb_logger_factory() (in module deepSTRF.training.wandb_log) mel_to_Hz() (in module deepSTRF.models.scales) module deepSTRF deepSTRF.datasets deepSTRF.datasets.audio deepSTRF.datasets.audio.alice_eeg deepSTRF.datasets.audio.audio_dataset deepSTRF.datasets.audio.crcns_aa1 deepSTRF.datasets.audio.crcns_aa2 deepSTRF.datasets.audio.crcns_aa4 deepSTRF.datasets.audio.espejo deepSTRF.datasets.audio.le_2025 deepSTRF.datasets.audio.nat4 deepSTRF.datasets.audio.ns1 deepSTRF.datasets.neural_dataset deepSTRF.datasets.video deepSTRF.datasets.video.video_dataset deepSTRF.metrics deepSTRF.metrics.losses deepSTRF.metrics.performance deepSTRF.models deepSTRF.models.activations deepSTRF.models.audio deepSTRF.models.audio.audio_model deepSTRF.models.audio.audio_zoo deepSTRF.models.layers deepSTRF.models.neural_model deepSTRF.models.prefiltering deepSTRF.models.readouts deepSTRF.models.scales deepSTRF.models.video deepSTRF.models.video.video_model deepSTRF.training deepSTRF.training.config deepSTRF.training.fitter deepSTRF.training.multi_seed deepSTRF.training.seed deepSTRF.training.tb_log deepSTRF.training.wandb_log deepSTRF.utils deepSTRF.utils.data deepSTRF.utils.data_download deepSTRF.utils.hub deepSTRF.utils.plotting

mse_loss() (in module deepSTRF.metrics) (in module deepSTRF.metrics.losses)

N

NAT4Dataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.nat4) NetworkReceptiveField (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_zoo) neural_collate() (in module deepSTRF.utils) (in module deepSTRF.utils.data) NeuralDataset (class in deepSTRF.datasets) (class in deepSTRF.datasets.neural_dataset) NeuralModel (class in deepSTRF.models) (class in deepSTRF.models.neural_model) noise_power() (in module deepSTRF.metrics) (in module deepSTRF.metrics.performance)

normalize_responses() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) normalize_videos() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) normalized_corrcoef() (in module deepSTRF.metrics) (in module deepSTRF.metrics.performance) nrn_masks (deepSTRF.datasets.neural_dataset.NeuralDataset property) (deepSTRF.datasets.NeuralDataset property) NS1Dataset (class in deepSTRF.datasets.audio) (class in deepSTRF.datasets.audio.ns1)

O

OFF_kernel() (deepSTRF.models.prefiltering.AdapTrans method) on_epoch_end() (deepSTRF.training.Fitter method) (deepSTRF.training.fitter.Fitter method)

ON_kernel() (deepSTRF.models.prefiltering.AdapTrans method) osf_download() (in module deepSTRF.utils.data_download) out_channels (deepSTRF.models.prefiltering.AdapTrans attribute) (deepSTRF.models.prefiltering.ICAdaptation attribute)

P

ParametricDoubleExponential (class in deepSTRF.models.activations) ParametricSigmoid (class in deepSTRF.models.activations) ParametricSoftplus (class in deepSTRF.models.activations) ParametricSTRF (class in deepSTRF.models.layers) plot_kernels() (deepSTRF.models.prefiltering.AdapTrans method) (deepSTRF.models.prefiltering.ICAdaptation method) plot_psth_vs_pred() (in module deepSTRF.utils) (in module deepSTRF.utils.plotting)

plot_stim_with_response() (in module deepSTRF.utils) (in module deepSTRF.utils.plotting) plot_strf_grid() (in module deepSTRF.utils) (in module deepSTRF.utils.plotting) poisson_loss() (in module deepSTRF.metrics) (in module deepSTRF.metrics.losses) push_to_hub() (deepSTRF.models.neural_model.NeuralModel method) (deepSTRF.models.NeuralModel method)

R

reset_pop_selection() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) reset_stim_selection() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method)

ResponseSmoothingTransform (class in deepSTRF.utils) (class in deepSTRF.utils.data)

S

save_pretrained() (deepSTRF.models.neural_model.NeuralModel method) (deepSTRF.models.NeuralModel method) save_pretrained_to_dir() (in module deepSTRF.utils.hub) select_critical_interval() (deepSTRF.datasets.audio.Le2025Dataset method) (deepSTRF.datasets.audio.le_2025.Le2025Dataset method) select_motif() (deepSTRF.datasets.audio.Le2025Dataset method) (deepSTRF.datasets.audio.le_2025.Le2025Dataset method) select_neuron() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_pop_by_nrn_attr() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_pop_by_nrn_predicate() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_pop_by_stim_attr() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_pop_by_stim_predicate() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_population() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_restoration_quartet() (deepSTRF.datasets.audio.Le2025Dataset method) (deepSTRF.datasets.audio.le_2025.Le2025Dataset method) select_stim() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_stims() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_stims_by_attr() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_stims_by_predicate() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) select_variant() (deepSTRF.datasets.audio.Le2025Dataset method) (deepSTRF.datasets.audio.le_2025.Le2025Dataset method) SeparableSTRF (class in deepSTRF.models.layers)

set_random_seed() (in module deepSTRF.training) (in module deepSTRF.training.seed) signal_power() (in module deepSTRF.metrics) (in module deepSTRF.metrics.performance) SinusoidalPositionalEncoding (class in deepSTRF.models.layers) slug_from_config() (in module deepSTRF.training) (in module deepSTRF.training.config) smooth_responses() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) snr() (in module deepSTRF.metrics) (in module deepSTRF.metrics.performance) split_into_clips() (deepSTRF.datasets.video.video_dataset.VideoNeuralDataset method) (deepSTRF.datasets.video.VideoNeuralDataset method) standardize_stims() (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) StateNet (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_zoo) stream_download() (in module deepSTRF.utils.data_download) STRF_gradmap() (deepSTRF.models.audio.audio_model.AudioEncodingModel method) (deepSTRF.models.audio.AudioEncodingModel method) (deepSTRF.models.video.video_model.VideoEncodingModel method) (deepSTRF.models.video.VideoEncodingModel method) STRF_weight() (deepSTRF.models.audio.audio_zoo.Linear method) (deepSTRF.models.audio.Linear method) (deepSTRF.models.layers.CausalSTRFConv method) (deepSTRF.models.readouts.STRFReadout method) STRFReadout (class in deepSTRF.models.readouts) STRFs() (deepSTRF.models.audio.audio_zoo.DNet method) (deepSTRF.models.audio.audio_zoo.NetworkReceptiveField method) (deepSTRF.models.audio.DNet method) (deepSTRF.models.audio.NetworkReceptiveField method)

T

tau() (deepSTRF.models.layers.LearnableExponentialDecay method) tau_to_a() (in module deepSTRF.models.prefiltering)

TensorBoardSeedLogger (class in deepSTRF.training.tb_log) Transformer (class in deepSTRF.models.audio) (class in deepSTRF.models.audio.audio_zoo)

U

untar() (in module deepSTRF.utils.data_download)

unzip() (in module deepSTRF.utils.data_download) upload_pretrained() (in module deepSTRF.utils.hub)

V

validate() (deepSTRF.datasets.audio.audio_dataset.AudioNeuralDataset method) (deepSTRF.datasets.audio.AudioNeuralDataset method) (deepSTRF.datasets.neural_dataset.NeuralDataset method) (deepSTRF.datasets.NeuralDataset method) (deepSTRF.models.audio.audio_model.AudioEncodingModel method) (deepSTRF.models.audio.AudioEncodingModel method) (deepSTRF.models.neural_model.NeuralModel method) (deepSTRF.models.NeuralModel method) (deepSTRF.models.video.video_model.VideoEncodingModel method) (deepSTRF.models.video.VideoEncodingModel method)

VideoEncodingModel (class in deepSTRF.models.video) (class in deepSTRF.models.video.video_model) VideoNeuralDataset (class in deepSTRF.datasets.video) (class in deepSTRF.datasets.video.video_dataset)

W

WandbSeedLogger (class in deepSTRF.training.wandb_log) waveform_gradmap() (deepSTRF.models.audio.audio_model.AudioEncodingModel method) (deepSTRF.models.audio.AudioEncodingModel method)

Willmore_Adaptation (in module deepSTRF.models.prefiltering) Wingert2026Dataset (class in deepSTRF.datasets.audio)

Z

zenodo_download() (in module deepSTRF.utils.data_download)